Patholytix Integration API
Patholytix is a cloud-based research pathology platform used by pharmaceutical companies, CROs, and research institutions to manage digital slides, run AI-assisted analysis, and collaborate on pathology data at scale — across exploratory studies, GLP safety studies, and clinical research.
This API gives CRO integration engineers, pharma sponsor developers, and internal teams programmatic access to Patholytix: load study hierarchies, manage slide assignments, trigger cloud image transfers, and extract results — without touching the UI.
What you can do
| Area | Description |
|---|---|
| Studies | Create and manage studies, subjects, organs, and their metadata |
| Slides | Read, update, and assign slide records created by the image ingestion pipeline |
| Findings | Read pathology findings recorded by pathologists (read-only) |
| Codes | Manage column label dictionaries for a study |
| Exports | Export a study's full hierarchy to JSON or Excel asynchronously |
| Cloud Image Transfers | Move whole-slide images directly between cloud buckets without local download |
Base URL
All API requests are made to:
https://api.dev2.patholytix.com/api
Authentication
The API uses OAuth 2.0 Client Credentials flow. You exchange a client_id and client_secret for a JWT access token, then include that token on every API request.
See Authentication for a step-by-step walkthrough.
Versioning
The API is versioned. Breaking changes are announced in advance with deprecation headers and changelog entries. See Versioning for the full policy.
Next steps
- Request API credentials from your Deciphex contact
- Follow the Authentication guide to get your first token
- Make your first API call
- Browse the API Reference to explore all endpoints